I'm using Filezilla and it work pretty good but there's a behavior I don't expect nor understand, uploading a whole new directory sometime it ask for file replacement and it show different size.
My hosting doesn't support unzip so I'm uploading a lot of unzipped wordpress*.zip, the same hosting support up to 7 ftp connections so I'm using 6 threads (with 7 sometime it fail and reconnect).
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Linux hellspawn 3.10-3-686-pae #1 SMP Debian 3.10.11-1 (2013-09-10) i686 GNU/Linux
ii filezilla 3.7.3-1 i386 Full-featured graphical FTP/FTPS/SFTP client
ii filezilla-common 3.7.3-1 all Architecture independent files for filezilla