This only happens when having TLS enabled. To me it seems that after the first chunk of data something wents wrong.
I tried filezilla 3.5.3 from the official ubuntu repository as well as today's svn checkout.
The problem began after an upgrade to Ubuntu 12.04, wich introduced an upgrade from filezilla 3.5.0 to 3.5.3. The problem might be somewhere between fz and gnutls, but I am not sure.
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01:57:32 Status: Connection established, waiting for welcome message...
01:57:32 Response: 220 Hi
01:57:32 Command: AUTH TLS
01:57:32 Response: 234 AUTH TLS successful
01:57:32 Status: Initializing TLS...
01:57:32 Status: Verifying certificate...
01:57:33 Command: USER schadow
01:57:33 Status: TLS/SSL connection established.
01:57:33 Response: 331 Password required for schadow
01:57:33 Command: PASS *********
01:57:33 Response: 230 User schadow logged in
[...]
01:57:34 Command: OPTS UTF8 ON
01:57:34 Response: 200 UTF8 set to on
01:57:34 Command: PBSZ 0
01:57:34 Response: 200 PBSZ 0 successful
01:57:34 Command: PROT P
01:57:34 Response: 200 Protection set to Private
01:57:34 Status: Connected
01:57:34 Status: Starting upload of /media/prometheus/Audio1.mp2
01:57:34 Command: CWD /schadow
01:57:34 Response: 250 CWD command successful
01:57:34 Command: PWD
01:57:34 Response: 257 "/schadow" is the current directory
01:57:34 Status: Retrieving directory listing...
01:57:34 Command: TYPE I
01:57:34 Response: 200 Type set to I
01:57:34 Command: PASV
01:57:34 Response: 227 Entering Passive Mode (188,165,196,***,234,73).
01:57:34 Command: MLSD
01:57:34 Response: 150 Opening ASCII mode data connection for MLSD
01:57:34 Response: 226 Transfer complete
01:57:34 Command: PASV
01:57:35 Response: 227 Entering Passive Mode (188,165,196,***,220,125).
01:57:35 Command: STOR Audio1.mp2
01:57:35 Response: 150 Opening BINARY mode data connection for Audio1.mp2
01:57:56 Error: Connection timed out
01:57:56 Error: File transfer failed after transferring 81,920 bytes in 21 seconds
Linux Ubuntu 12.04
gnutls package versions:
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ii libgnutls-dev 2.12.14-5ubuntu3 GNU TLS library - development files
ii libgnutls-openssl27 2.12.14-5ubuntu3 GNU TLS library - OpenSSL wrapper
ii libgnutls26 2.12.14-5ubuntu3 GNU TLS library - runtime library
ii libgnutlsxx27 2.12.14-5ubuntu3 GNU TLS library - C++ runtime library